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Crystal structure of a putative zinc-dependent alcohol dehydrogenase protein from Rhizobium etli CFN 42
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.2M Na acetate, 0.1M Tris pH 8.5, 25% PEG 4K, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.33 47.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 185.312 α = 90 b = 42.239 β = 122.39 c = 111.265 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Mirrors 2012-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.9788 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 50 99.9 0.09 7.4 7.1 50492 50492
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.06 100 0.26 5 6 4988
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.99 48.66 50491 47811 2559 99.55 0.1645 0.16223 0.1639 0.20618 0.2063 RANDOM 22.523
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.06 0.14 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.521 r_dihedral_angle_4_deg 20.912 r_dihedral_angle_3_deg 14.265 r_dihedral_angle_1_deg 6.912 r_scangle_it 5.719 r_scbond_it 3.711 r_mcangle_it 2.085 r_angle_refined_deg 1.992 r_mcbond_it 1.298 r_chiral_restr 0.163
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.521 r_dihedral_angle_4_deg 20.912 r_dihedral_angle_3_deg 14.265 r_dihedral_angle_1_deg 6.912 r_scangle_it 5.719 r_scbond_it 3.711 r_mcangle_it 2.085 r_angle_refined_deg 1.992 r_mcbond_it 1.298 r_chiral_restr 0.163 r_bond_refined_d 0.028 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5142 Nucleic Acid Atoms Solvent Atoms 440 Heterogen Atoms
Software Software Software Name Purpose CBASS data collection AutoSol phasing Coot model building CCP4 model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CCP4 phasing