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cytochrome P450 BM3h-8C8 MRI sensor bound to serotonin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DTZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 300 0.1 M Tris, pH 8.5, 0.2 M MgCl2, 22 % PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.66 53.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.606 α = 90 b = 146.249 β = 97.51 c = 64.064 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 1.033 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 38.874 92.5 0.078 9 2.4 91179 91179
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 95 0.58 0.58 1.1 2.4 13656
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4DTZ 1.8 38.87 91081 4678 92.34 0.1949 0.1917 0.1907 0.254 0.2504 RANDOM 22.834
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.8 0.21 -0.74 1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.9 r_dihedral_angle_4_deg 18.867 r_dihedral_angle_3_deg 14.747 r_dihedral_angle_1_deg 6.759 r_scangle_it 4.67 r_scbond_it 3.143 r_angle_refined_deg 1.971 r_mcangle_it 1.872 r_mcbond_it 1.199 r_chiral_restr 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.9 r_dihedral_angle_4_deg 18.867 r_dihedral_angle_3_deg 14.747 r_dihedral_angle_1_deg 6.759 r_scangle_it 4.67 r_scbond_it 3.143 r_angle_refined_deg 1.971 r_mcangle_it 1.872 r_mcbond_it 1.199 r_chiral_restr 0.14 r_bond_refined_d 0.023 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7298 Nucleic Acid Atoms Solvent Atoms 1056 Heterogen Atoms 113
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection XSCALE data scaling MOLREP phasing