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Crystal Structure of Rhagium inquisitor Antifreeze Protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 4 298 24% PEG 3350, 0.2 M (NH4)2SO4, pH 4.0, EVAPORATION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.18 43.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.46 α = 90 b = 46.46 β = 90 c = 193.21 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2011-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.1000 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 27.79 70.2 0.062 8.4 2.3 334114 234706 1.45 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.14 1.17 7.4 0.192 1.36
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.15 40.27 73730 72486 3816 86.64 0.13774 0.13652 0.1387 0.16086 0.1617 RANDOM 9.971
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.07 -0.07 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.157 r_sphericity_free 29.225 r_dihedral_angle_4_deg 12.801 r_dihedral_angle_3_deg 8.645 r_sphericity_bonded 7.925 r_dihedral_angle_1_deg 4.961 r_rigid_bond_restr 2.226 r_angle_refined_deg 1.502 r_angle_other_deg 1.131 r_chiral_restr 0.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.157 r_sphericity_free 29.225 r_dihedral_angle_4_deg 12.801 r_dihedral_angle_3_deg 8.645 r_sphericity_bonded 7.925 r_dihedral_angle_1_deg 4.961 r_rigid_bond_restr 2.226 r_angle_refined_deg 1.502 r_angle_other_deg 1.131 r_chiral_restr 0.102 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.006 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1856 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement PHENIX refinement PDB_EXTRACT data extraction HKL-3000 data collection XDS data reduction XSCALE data scaling