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Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 HANGING DROP 6.5 277 MPD, pH 6.5, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.52 72.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 403.038 α = 90 b = 403.038 β = 90 c = 174.361 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.98 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.6 35 99.2 0.085 12 4.8 163468 163468 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.6 3.73 99.2 0.923 4.8 16146
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS 3.6 34.644 1.33 163397 163397 8155 99.21 0.1594 0.1568 0.1547 0.2066 0.2031 FROM PDB ENTRY 2VQE 167.8544
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.2438 -4.2438 8.4876
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.484 f_angle_d 1.495 f_chiral_restr 0.086 f_bond_d 0.012 f_plane_restr 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19088 Nucleic Acid Atoms 32507 Solvent Atoms 239 Heterogen Atoms 256
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHENIX refinement PDB_EXTRACT data extraction HKL-2000 data collection PHENIX phasing