☰ Navigation Tabs
The Central Valine Concept Provides an Entry in a New Class of Non Peptide Inhibitors of the P53-MDM2 Interaction
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other IN HOUSE DETERMINED X-RAY STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 0.1M Tris, 0.2M LiSO4, 22% PEG3350, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.86 57.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.234 α = 90 b = 38.234 β = 90 c = 175.151 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.8000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 91.3 0.053 27.5 5.5 18006 18006
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 53.1 0.157 4.8 3 1032
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT IN HOUSE DETERMINED X-RAY STRUCTURE 1.9 20 17072 17072 918 91.57 0.19536 0.19536 0.19391 0.1942 0.22365 0.2232 RANDOM 20.438
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 0.63 -1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.344 r_dihedral_angle_4_deg 18.304 r_dihedral_angle_3_deg 12.628 r_dihedral_angle_1_deg 5.356 r_scangle_it 2.871 r_scbond_it 1.648 r_angle_refined_deg 1.058 r_mcangle_it 1.035 r_mcbond_it 0.51 r_chiral_restr 0.067
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.344 r_dihedral_angle_4_deg 18.304 r_dihedral_angle_3_deg 12.628 r_dihedral_angle_1_deg 5.356 r_scangle_it 2.871 r_scbond_it 1.648 r_angle_refined_deg 1.058 r_mcangle_it 1.035 r_mcbond_it 0.51 r_chiral_restr 0.067 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1532 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 80
Software Software Software Name Purpose RemDAq data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling