☰ Navigation Tabs
c-SRC kinase domain in complex with RM-1-176
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 6% PEG 20000, 100 mM MES pH 6.5, 2.0 mM RM-1-176 in 10% DMSO, vapor diffusion, sitting drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.97 58.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.17 α = 78.73 b = 63.48 β = 88.48 c = 74 γ = 89.93
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2010-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.9795 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 52.598 81 0.195 6.2 3.8 17677 17677
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.79 72.9 0.01 1.011 0.7 3.7 2313
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.65 72.55 17677 866 80.85 0.2102 0.2081 0.2518 0.2484 RANDOM 39.6264
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.56 -0.8 -1.17 1.11 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.648 r_dihedral_angle_3_deg 15.207 r_dihedral_angle_4_deg 14.461 r_dihedral_angle_1_deg 5.96 r_angle_refined_deg 1.304 r_angle_other_deg 0.983 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.648 r_dihedral_angle_3_deg 15.207 r_dihedral_angle_4_deg 14.461 r_dihedral_angle_1_deg 5.96 r_angle_refined_deg 1.304 r_angle_other_deg 0.983 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4173 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 64
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection MOSFLM data reduction