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Crystal structure of spleen tyrosine kinase complexed with an adamantylpyrazine inhibitor
Crystallization Crystal Properties Matthews coefficient Solvent content 2.52 51.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.295 α = 90 b = 84.848 β = 90 c = 90.996 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PILATUS 6M DECTRIS 2009-04-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 62.06 99.4 0.069 5.6 11590
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.48 2.64 97.2 0.819 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.48 62.06 11532 1018 99.5 0.222 0.2171 0.2202 0.2734 0.2784 RANDOM 73.515
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 -2.91 2.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.322 r_dihedral_angle_4_deg 15.642 r_dihedral_angle_3_deg 12.723 r_dihedral_angle_1_deg 5.02 r_scangle_it 4.529 r_scbond_it 3.062 r_mcangle_it 2.051 r_mcbond_it 1.134 r_angle_refined_deg 0.862 r_angle_other_deg 0.744
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.322 r_dihedral_angle_4_deg 15.642 r_dihedral_angle_3_deg 12.723 r_dihedral_angle_1_deg 5.02 r_scangle_it 4.529 r_scbond_it 3.062 r_mcangle_it 2.051 r_mcbond_it 1.134 r_angle_refined_deg 0.862 r_angle_other_deg 0.744 r_mcbond_other 0.244 r_chiral_restr 0.054 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2190 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling