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Crystal structure of an immunogenic protein from ehrlichia chaffeensis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 290 EBS SCREEN JCSG+ H6: 100MM BISTRIS PH 6.5, 17% PEG 10K, 100MM AMMONIUM ACETATE, EHCHA.00493.A.A2 PS01157 AT 18MG/ML; CRYSTAL FOR PHASING WAS SOAKED IN CRYSTALLIZATION BUFFER CONTAINING 1M IODIDE, PH 8.5., VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.59 52.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.71 α = 90 b = 65.44 β = 90 c = 90.97 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 RIGAKU VARIMAX 2011-08-12 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD RIGAKU SATURN 944+ RIGAKU VARIMAX 2012-01-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418 2 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 50 99 0.061 0.061 21.2 5.94 30172 29858 -3 22.47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.9 1.95 91.3 0.309 0.309 3.6 2.8 2168
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 45.49 30172 29858 1515 99 0.161 0.161 0.159 0.188 0.1752 RANDOM 13.57
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 0.11 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.188 r_dihedral_angle_4_deg 16.148 r_dihedral_angle_3_deg 13.122 r_dihedral_angle_1_deg 6.037 r_angle_refined_deg 1.685 r_angle_other_deg 0.962 r_chiral_restr 0.104 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.188 r_dihedral_angle_4_deg 16.148 r_dihedral_angle_3_deg 13.122 r_dihedral_angle_1_deg 6.037 r_angle_refined_deg 1.685 r_angle_other_deg 0.962 r_chiral_restr 0.104 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2300 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 19
Software Software Software Name Purpose StructureStudio data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling