☰ Navigation Tabs
Crystal structure of the hexameric purine nucleoside phosphorylase from Bacillus subtilis in complex with adenosine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.6 291 0.1 M sodium acetate, 3.2 M sodium chloride, 5%(v/v) glycerol, pH 4.6, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.71 54.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.724 α = 90 b = 135.724 β = 90 c = 56.098 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 40 100 0.082 14.6 6.3 46265 46265
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 2.01 100 0.559 0.559 1.4 6.2 6696
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.91 20 46217 2270 99.88 0.1469 0.1454 0.1376 0.1748 0.1636 RANDOM 26.5213
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -8.02 -8.02 16.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.956 r_dihedral_angle_3_deg 14.941 r_dihedral_angle_4_deg 11.922 r_dihedral_angle_1_deg 6.415 r_scangle_it 3.407 r_scbond_it 2.101 r_angle_refined_deg 1.359 r_mcangle_it 1.3 r_mcbond_it 0.745 r_chiral_restr 0.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.956 r_dihedral_angle_3_deg 14.941 r_dihedral_angle_4_deg 11.922 r_dihedral_angle_1_deg 6.415 r_scangle_it 3.407 r_scbond_it 2.101 r_angle_refined_deg 1.359 r_mcangle_it 1.3 r_mcbond_it 0.745 r_chiral_restr 0.096 r_bond_refined_d 0.014 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3506 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 19
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction MOLREP phasing