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Crystal structure of mouse C1QL1 globular domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C28 PDB ENTRY 1C28
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 0.02M NICKEL(II) CHLORIDE HEXAHYDRATE, 0.02M MAGNESIUM CHLORIDE HEXAHYDRATE, 0.02M CADMIUM CHLORIDE HYDRATE, 0.1M SODIUM ACETATE TRIHYDRATE PH 4.5, 24% W/V POLYETHYLENE GLYCOL, MONOMETHYL ETHER 2,000
Crystal Properties Matthews coefficient Solvent content 1.84 33.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.08 α = 90 b = 68.08 β = 90 c = 65.91 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.44 43.94 100 0.07 16.9 7.6 20630 2 13.65
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.44 1.48 99.9 0.88 2 7.3
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1C28 1.44 34.04 1.99 20628 1025 99.97 0.1415 0.1401 0.1436 0.1693 0.1468
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.756 f_angle_d 1.096 f_chiral_restr 0.049 f_bond_d 0.006 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1009 Nucleic Acid Atoms Solvent Atoms 85 Heterogen Atoms 7
Software Software Software Name Purpose PHENIX refinement xia2 data reduction xia2 data scaling PHASER phasing