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Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre, avirulent form complexed with 6-sialyllactose.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 25MM MORPHOLINO-ETHANESULFONIC ACID, 0.5-1.0 M DIAMMONIUM PHOSPHATE, 0.1M SODIUM CITRATE PH 5.5-5.8, 0.2-0.3M SODIUM CHLORIDE
Crystal Properties Matthews coefficient Solvent content 1.94 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.46 α = 90 b = 98.46 β = 90 c = 98.46 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r TWO CYLINDRICAL VERTICAL FOCUSING PARABOLIC MIRRORS 2013-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 25 99.9 0.07 18.8 9.3 7836 40.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 100 0.58 4 9.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.2 25 7836 383 99.87 0.17885 0.177 0.1831 0.21477 0.2216 THIN SHELLS 47.659
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.478 r_dihedral_angle_4_deg 20.577 r_dihedral_angle_3_deg 15.404 r_dihedral_angle_1_deg 7.753 r_scangle_it 6.41 r_mcangle_it 5.01 r_scbond_it 3.932 r_mcbond_other 3.262 r_mcbond_it 3.26 r_angle_refined_deg 1.643
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.478 r_dihedral_angle_4_deg 20.577 r_dihedral_angle_3_deg 15.404 r_dihedral_angle_1_deg 7.753 r_scangle_it 6.41 r_mcangle_it 5.01 r_scbond_it 3.932 r_mcbond_other 3.262 r_mcbond_it 3.26 r_angle_refined_deg 1.643 r_angle_other_deg 0.756 r_symmetry_vdw_refined 0.228 r_nbd_refined 0.208 r_nbd_other 0.18 r_symmetry_vdw_other 0.173 r_nbtor_refined 0.171 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.085 r_nbtor_other 0.081 r_xyhbond_nbd_other 0.062 r_symmetry_hbond_refined 0.037 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1092 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling