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Structure of N-terminally truncated A49 from Vaccinia Virus Western Reserve
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 293 CRYSTALS WERE GROWN BY MIXING 2 UL PROTEIN (20-21 MG/ML) WITH 2 UL RESERVOIR SOLUTION AND EQUILIBRATING AT 20 C AGAINST 500 UL RESERVOIRS CONTAINING 1.3- 1.5 M SODIUM MALONATE PH 6.8, 1% (VOL/VOL) PEG 400 AND 4-10% (VOL/VOL) GLYCEROL, THE BEST CRYSTALS BEING OBTAINED WHEN THE RESERVOIR WAS OVERLAID WITH 100 UL OF A 1:1 MIXTURE OF PARAFFIN AND SILICONE OIL (MOLECULAR DIMENSIONS). CRYSTALS WERE CRYOPROTECTED BY BRIEF IMMERSION IN 2.1 M SODIUM MALONATE, 1% (VOL/VOL) PEG 400 AND 5% (VOL/VOL) GLYCEROL.
Crystal Properties Matthews coefficient Solvent content 2.16 43.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.85 α = 90 b = 42.74 β = 100.51 c = 67.19 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M TOROIDAL MIRRORS 2013-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 33 99.6 0.04 32.2 14.1 25211 -3 38.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 99 1.15 2.9 13.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT NONE 1.9 33.03 23928 1279 99.51 0.18735 0.18521 0.1937 0.2264 0.23 RANDOM 61.597
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.85 -0.3 5.38 -3.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.967 r_dihedral_angle_4_deg 21.013 r_dihedral_angle_3_deg 13.086 r_dihedral_angle_1_deg 5.672 r_mcangle_it 4.527 r_scbond_it 4.518 r_mcbond_it 3.548 r_mcbond_other 3.545 r_angle_refined_deg 1.749 r_angle_other_deg 1.239
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.967 r_dihedral_angle_4_deg 21.013 r_dihedral_angle_3_deg 13.086 r_dihedral_angle_1_deg 5.672 r_mcangle_it 4.527 r_scbond_it 4.518 r_mcbond_it 3.548 r_mcbond_other 3.545 r_angle_refined_deg 1.749 r_angle_other_deg 1.239 r_chiral_restr 0.105 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.007 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2399 Nucleic Acid Atoms Solvent Atoms 85 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling autoSHARP phasing