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tetracycline repressor class J, apo form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 1.0 M (NH4)2SO4, 0.07 M NACL, 0.05 M HEPES PH 7.0; CRYO 1.0 M (NH4)2SO4, 0.07 M NACL, 0.05 M HEPES PH 7.0, 10% GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.15 α = 90 b = 106.06 β = 90 c = 70.08 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD RIGAKU CCD MIRROR 2014-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 95.7 0.06 29.7 8.7 21903 13
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.75 71.1 0.81 2 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 53.03 20809 1094 95.71 0.17486 0.17364 0.19722 0.1782 RANDOM 26.203
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.19 -4.83 2.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.074 r_dihedral_angle_3_deg 14.535 r_dihedral_angle_4_deg 9.978 r_dihedral_angle_1_deg 4.835 r_mcangle_it 2.14 r_scbond_it 1.715 r_angle_refined_deg 1.529 r_mcbond_it 1.324 r_mcbond_other 1.3 r_angle_other_deg 0.857
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.074 r_dihedral_angle_3_deg 14.535 r_dihedral_angle_4_deg 9.978 r_dihedral_angle_1_deg 4.835 r_mcangle_it 2.14 r_scbond_it 1.715 r_angle_refined_deg 1.529 r_mcbond_it 1.324 r_mcbond_other 1.3 r_angle_other_deg 0.857 r_chiral_restr 0.088 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1528 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing