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CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH L-GALACTOPYRANOSE.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AGI PDB ENTRY 4AGI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 200 MM CACL2, 25% PEG 4K AND 100 MM TRIS, PH 8.5
Crystal Properties Matthews coefficient Solvent content 2.2 43.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.03 α = 90 b = 70.44 β = 108.34 c = 117.8 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 34.44 97.1 0.08 12 3.7 121067 2 13.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.85 96.1 0.39 3.2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4AGI 1.76 111.82 114970 6078 97.3 0.15493 0.15374 0.1778 0.182 RANDOM 17.275
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.91 0.81 -1.41 1.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.946 r_dihedral_angle_4_deg 15.23 r_dihedral_angle_3_deg 11.926 r_dihedral_angle_1_deg 7.536 r_mcangle_it 1.619 r_angle_refined_deg 1.455 r_scbond_it 1.442 r_mcbond_it 1.013 r_mcbond_other 1.013 r_angle_other_deg 0.779
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.946 r_dihedral_angle_4_deg 15.23 r_dihedral_angle_3_deg 11.926 r_dihedral_angle_1_deg 7.536 r_mcangle_it 1.619 r_angle_refined_deg 1.455 r_scbond_it 1.442 r_mcbond_it 1.013 r_mcbond_other 1.013 r_angle_other_deg 0.779 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9753 Nucleic Acid Atoms Solvent Atoms 1060 Heterogen Atoms 454
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing