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Focal Adhesion Kinase catalytic domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JKK PDB ENTRY 2JKK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1 M TRIS PH 8.5, 0.075M LISO4, 20% PEG4000, 10 MM TCEP
Crystal Properties Matthews coefficient Solvent content 2.26 45.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.266 α = 90 b = 124.877 β = 94.33 c = 50.814 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-08-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 62.44 99.9 0.04 12.7 4.8 37958 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 99.9 0.36 2.1 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2JKK 2 62.44 36002 1923 99.87 0.20731 0.20632 0.2122 0.2251 0.2302 RANDOM 41.444
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.06 0.03 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.909 r_dihedral_angle_4_deg 19.961 r_dihedral_angle_3_deg 14.086 r_dihedral_angle_1_deg 5.12 r_angle_refined_deg 1.049 r_mcangle_it 0.947 r_angle_other_deg 0.773 r_mcbond_it 0.506 r_mcbond_other 0.506 r_scbond_it 0.387
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.909 r_dihedral_angle_4_deg 19.961 r_dihedral_angle_3_deg 14.086 r_dihedral_angle_1_deg 5.12 r_angle_refined_deg 1.049 r_mcangle_it 0.947 r_angle_other_deg 0.773 r_mcbond_it 0.506 r_mcbond_other 0.506 r_scbond_it 0.387 r_chiral_restr 0.055 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4146 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing