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Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, selenomethionine-derivative
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 10 MM TRIS-HCL PH 8.5, 10 MM BETA-MERCAPTOETHANOL, 1.7 M AMMONIUM SULFATE, 0.085 M HEPES SODIUM SALT PH 7.5, 1.7%(V/V) POLYETHYLENE GLYCOL (PEG) 400, 15%(V/V) GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.24 45.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 149.54 α = 90 b = 149.54 β = 90 c = 149.54 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r TOROIDAL FOCUSING MIRROR 2012-10-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9768, 0.9791, 0.9793 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 100 0.09 18.2 12.2 72960 13.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 100 0.4 6.2 12.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.6 29.33 70937 1975 99.95 0.15884 0.15797 0.1638 0.18854 0.1946 THIN SHELLS 18.448
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.935 r_scbond_it 2.442 r_mcangle_it 2.201 r_angle_refined_deg 1.542 r_mcbond_it 1.336 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.248 r_nbd_refined 0.225 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.12
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.935 r_scbond_it 2.442 r_mcangle_it 2.201 r_angle_refined_deg 1.542 r_mcbond_it 1.336 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.248 r_nbd_refined 0.225 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.12 r_chiral_restr 0.103 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3228 Nucleic Acid Atoms Solvent Atoms 534 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling autoSHARP phasing