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Hyaluronan Binding Module of the Streptococcal Pneumoniae Hyaluronate Lyase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 292 BY THE SITTING DROP VAPOUR DIFFUSION METHOD BY MIXING EQUAL AMOUNTS OF THE PROTEIN SOLUTION WITH A MOTHER LIQUOR CONSISTING OF 18% (W/V) POLYETHYLENE GLYCOL 3,350 AND 0.1 M SODIUM ACETATE (PH 5.5) AT 292 K.
Crystal Properties Matthews coefficient Solvent content 2.06 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.44 α = 90 b = 60.8 β = 95.53 c = 35.47 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MX300HE MIRRORS 2012-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08B1-1 CLSI 08B1-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 35.3 99.4 0.04 26.7 7.3 45456
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.26 96.2 0.43 4.5 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.2 35.31 42890 2281 99.37 0.12878 0.12715 0.1249 0.15939 0.1592 RANDOM 15.854
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.34 0.8 -0.08 1.24
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 46.307 r_sphericity_bonded 16.636 r_rigid_bond_restr 7.629 r_scbond_it 5.346 r_angle_other_deg 2.983 r_mcangle_it 2.186 r_mcbond_it 1.772 r_angle_refined_deg 1.63 r_mcbond_other 1.468 r_chiral_restr 0.112
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 46.307 r_sphericity_bonded 16.636 r_rigid_bond_restr 7.629 r_scbond_it 5.346 r_angle_other_deg 2.983 r_mcangle_it 2.186 r_mcbond_it 1.772 r_angle_refined_deg 1.63 r_mcbond_other 1.468 r_chiral_restr 0.112 r_bond_refined_d 0.014 r_gen_planes_refined 0.014 r_gen_planes_other 0.01 r_bond_other_d 0.001 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1264 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling SHELX phasing