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AKAP13 (AKAP-Lbc) RhoGEF domain in complex with RhoA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 0.2 M AMMONIUM SULPHATE, 0.1 M BIS-TRIS PH 5.5, 25% (W/V) PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.24 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.32 α = 90 b = 86.61 β = 90 c = 116.82 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2012-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 82.32 99.3 0.06 8.2 3.4 49042
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 95.8 0.45 1.6 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 69.57 46509 2476 99.07 0.21098 0.20943 0.2497 0.23946 0.2724 RANDOM 32.162
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.39 0.16 1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.88 r_dihedral_angle_4_deg 17.898 r_dihedral_angle_3_deg 14.478 r_dihedral_angle_1_deg 5.327 r_mcangle_it 1.756 r_scbond_it 1.161 r_angle_refined_deg 1.07 r_mcbond_it 1.045 r_mcbond_other 1.044 r_angle_other_deg 0.739
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.88 r_dihedral_angle_4_deg 17.898 r_dihedral_angle_3_deg 14.478 r_dihedral_angle_1_deg 5.327 r_mcangle_it 1.756 r_scbond_it 1.161 r_angle_refined_deg 1.07 r_mcbond_it 1.045 r_mcbond_other 1.044 r_angle_other_deg 0.739 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4365 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing