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Structure of the Cys65Asp mutant of phenylacetone monooxygenase: oxidised state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2YLS PDB ENTRY 2YLS
Crystallization Crystal Properties Matthews coefficient Solvent content 2.92 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.739 α = 90 b = 107.739 β = 90 c = 106.804 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PIXEL M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 54 100 0.06 13.9 7.5 65099
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 99.9 0.75 2.4 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2YLS 1.81 93.3 61615 3321 99.78 0.19493 0.19306 0.2005 0.23021 0.2345 RANDOM 35.862
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 0.36 0.72 -2.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.412 r_dihedral_angle_4_deg 20.095 r_dihedral_angle_3_deg 15.113 r_dihedral_angle_1_deg 6.226 r_scbond_it 3.968 r_mcangle_it 3.733 r_mcbond_it 3.073 r_mcbond_other 3.069 r_angle_refined_deg 2.006 r_angle_other_deg 0.926
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.412 r_dihedral_angle_4_deg 20.095 r_dihedral_angle_3_deg 15.113 r_dihedral_angle_1_deg 6.226 r_scbond_it 3.968 r_mcangle_it 3.733 r_mcbond_it 3.073 r_mcbond_other 3.069 r_angle_refined_deg 2.006 r_angle_other_deg 0.926 r_chiral_restr 0.124 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4239 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 131
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing