☰ Navigation Tabs
Truncated tetramerization domain of zebrafish p53 (crystal form I)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 293 SITTING DROP VAPOR DIFFUSION AT 20 DEGREE C; PROTEIN SOLUTION: 17 MG/ML IN 20 MM TRIS PH 7.5, 50 MM NACL, 5 MM DTT; CRYSTALLIZATION BUFFER: 2.4 M AMMONIUM SULFATE, 100 MM BICINE, PH 9.0
Crystal Properties Matthews coefficient Solvent content 1.9 35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.232 α = 90 b = 33.685 β = 90 c = 101.805 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.02 28.09 99.8 0.03 19.3 5.2 59076 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.02 1.08 99.9 0.54 3 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.02 28.1 56018 2982 99.71 0.15866 0.15759 0.17846 0.1897 RANDOM 15.458
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 2.14 -1.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.623 r_sphericity_free 27.875 r_dihedral_angle_3_deg 11.787 r_dihedral_angle_4_deg 10.555 r_sphericity_bonded 9.268 r_dihedral_angle_1_deg 4.201 r_scbond_it 2.243 r_rigid_bond_restr 2.195 r_mcangle_it 1.559 r_angle_refined_deg 1.339
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.623 r_sphericity_free 27.875 r_dihedral_angle_3_deg 11.787 r_dihedral_angle_4_deg 10.555 r_sphericity_bonded 9.268 r_dihedral_angle_1_deg 4.201 r_scbond_it 2.243 r_rigid_bond_restr 2.195 r_mcangle_it 1.559 r_angle_refined_deg 1.339 r_mcbond_it 1.224 r_mcbond_other 1.222 r_angle_other_deg 0.721 r_chiral_restr 0.074 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 986 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement