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Crystal structure of the KANSL1-WDR5 complex.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G99 PDB ENTRY 2G99
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 26% (W/V) PEG 3350, 0.2 M AMMONIUM SULPHATE, 0.1 M BIS-TRIS, PH 6.5.
Crystal Properties Matthews coefficient Solvent content 2.07 41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.76 α = 90 b = 92.45 β = 90.18 c = 81.17 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 100 96.7 0.08 13.6 3.8 90649 2.38
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 89 0.64 2.4 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2G99 1.5 40.58 86154 4494 96.53 0.17057 0.16989 0.1865 0.18344 0.1998 RANDOM 11.934
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.17 0.74 4.49 -3.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.663 r_dihedral_angle_3_deg 11.56 r_dihedral_angle_4_deg 10.987 r_dihedral_angle_1_deg 6.815 r_sphericity_bonded 2.657 r_rigid_bond_restr 2.55 r_angle_refined_deg 1.007 r_angle_other_deg 0.665 r_scbond_it 0.54 r_mcbond_it 0.443
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.663 r_dihedral_angle_3_deg 11.56 r_dihedral_angle_4_deg 10.987 r_dihedral_angle_1_deg 6.815 r_sphericity_bonded 2.657 r_rigid_bond_restr 2.55 r_angle_refined_deg 1.007 r_angle_other_deg 0.665 r_scbond_it 0.54 r_mcbond_it 0.443 r_mcbond_other 0.443 r_chiral_restr 0.06 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4891 Nucleic Acid Atoms Solvent Atoms 321 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing