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Neutron Structure of Compound I intermediate of Cytochrome c Peroxidase - Deuterium exchanged 100 K
X-RAY DIFFRACTION - NEUTRON DIFFRACTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 PH 6.0
Crystal Properties Matthews coefficient Solvent content 3.1 60.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.19 α = 90 b = 75.83 β = 90 c = 107.59 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ OSMIC HF 2013-08-01 M SINGLE WAVELENGTH 2 1 neutron 100 IMAGE PLATE FRM II OSMIC HF 2013-08-01 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418 2 NUCLEAR REACTOR FRM II BEAMLINE BIODIFF 3.39 FRM II BIODIFF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.18 50 99.3 0.074 16.5 4.7 22053 2 2.3 50 90.7 0.173 4.6 2.3 13661
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.18 2.25 0.428 5.9 1.7 2 2.5 2.59 0.428 1.5 1.7
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2.182 17.057 1.38 22053 1104 98.38 0.1516 0.1488 0.1452 0.2052 0.1982 NEUTRON DIFFRACTION MOLECULAR REPLACEMENT 2.501 46.225 1.34 13661 683 90.67 0.1914 0.1873 0.272
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.0213 2.2575 -3.5349 -1.9296 6.9359 -5.0063
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.757 f_angle_d 1.261 f_chiral_restr 0.091 f_bond_d 0.011 f_plane_restr 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2356 Nucleic Acid Atoms Solvent Atoms 315 Heterogen Atoms 43
Software Software Software Name Purpose PHENIX phasing PHENIX refinement DENZO data reduction SCALEPACK data scaling