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Crystal structure of human isoprenoid synthase domain-containing protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1M BIS-TRIS PH 6.5, 25%(W/V) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.81 56.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.36 α = 90 b = 116.8 β = 90 c = 111.8 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2013-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.39 65.64 99.3 0.07 8.6 3.2 20791 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.39 2.5 99.6 0.43 2.5 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.39 65.64 19687 1066 99.01 0.1912 0.18852 0.1933 0.24369 0.2474 RANDOM 47.944
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 0.19 -0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.042 r_dihedral_angle_4_deg 18.972 r_dihedral_angle_3_deg 13.512 r_mcangle_it 6.99 r_scbond_it 6.246 r_dihedral_angle_1_deg 5.41 r_mcbond_it 4.972 r_mcbond_other 4.956 r_angle_refined_deg 1.149 r_angle_other_deg 0.713
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.042 r_dihedral_angle_4_deg 18.972 r_dihedral_angle_3_deg 13.512 r_mcangle_it 6.99 r_scbond_it 6.246 r_dihedral_angle_1_deg 5.41 r_mcbond_it 4.972 r_mcbond_other 4.956 r_angle_refined_deg 1.149 r_angle_other_deg 0.713 r_chiral_restr 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3044 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling Rosetta phasing