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Crystal structure of ligand-bound NaD1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AAZ PDB ENTRY 4AAZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.2 M AMMONIUM SULFATE, 7 % PEG3350, 32 % MPD, 0.1 M IMIDAZOLE PH 7
Crystal Properties Matthews coefficient Solvent content 2.71 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.64 α = 90 b = 132.04 β = 90 c = 153.01 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 40.37 99.7 0.09 11.6 6.7 105745 2 14.97
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 94.7 0.62 2.2 5.4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 4AAZ 1.6 40.362 102135 5084 96.24 0.1563 0.1549 0.1615 0.1835 0.1882
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3844 1.9169 -2.3012
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 21.582 f_angle_d 1.651 f_chiral_restr 0.078 f_bond_d 0.01 f_plane_restr 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5096 Nucleic Acid Atoms Solvent Atoms 816 Heterogen Atoms 790
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing