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Structure of the Neuraminidase from the B/Lyon/CHU/15.216/2011 virus in complex with Oseltamivir
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4CPO PDB ENTRY 4CPO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 25% PEG 1500, 0.1M SUCCINIC ACID PH 9.0
Crystal Properties Matthews coefficient Solvent content 3.95 68.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 160.094 α = 90 b = 160.094 β = 90 c = 89.8 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 45.26 99.6 0.1 11.6 4.5 121778 2 14.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 99.9 0.52 2.2 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4CPO 1.8 45.26 115551 6193 99.55 0.17233 0.172 0.1446 0.17858 0.1529 RANDOM 16.233
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 1.19 -2.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.808 r_dihedral_angle_3_deg 13.231 r_dihedral_angle_4_deg 10.179 r_dihedral_angle_1_deg 6.85 r_angle_refined_deg 1.346 r_mcangle_it 0.794 r_angle_other_deg 0.766 r_scbond_it 0.724 r_mcbond_it 0.47 r_mcbond_other 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.808 r_dihedral_angle_3_deg 13.231 r_dihedral_angle_4_deg 10.179 r_dihedral_angle_1_deg 6.85 r_angle_refined_deg 1.346 r_mcangle_it 0.794 r_angle_other_deg 0.766 r_scbond_it 0.724 r_mcbond_it 0.47 r_mcbond_other 0.47 r_chiral_restr 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6030 Nucleic Acid Atoms Solvent Atoms 703 Heterogen Atoms 194
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing