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Macrocyclic Transition-State Mimicking HIV-1 Protease Inhibitors Encompassing a Tertiary Alcohol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other NON-PUBLISHED
Crystallization Crystal Properties Matthews coefficient Solvent content 2.7 54.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.47 α = 90 b = 86.02 β = 90 c = 46.36 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2013-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 27.68 100 0.1 5.7 7.2 26453
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 100 0.39 2 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NON-PUBLISHED 1.7 27.68 25071 1341 99.94 0.17192 0.17057 0.1808 0.19672 0.201 RANDOM 16.309
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 -0.43 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.844 r_dihedral_angle_4_deg 19.834 r_dihedral_angle_3_deg 13.913 r_dihedral_angle_1_deg 6.853 r_scbond_it 4.233 r_mcangle_it 2.394 r_mcbond_it 1.696 r_mcbond_other 1.695 r_angle_other_deg 1.203 r_angle_refined_deg 0.874
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.844 r_dihedral_angle_4_deg 19.834 r_dihedral_angle_3_deg 13.913 r_dihedral_angle_1_deg 6.853 r_scbond_it 4.233 r_mcangle_it 2.394 r_mcbond_it 1.696 r_mcbond_other 1.695 r_angle_other_deg 1.203 r_angle_refined_deg 0.874 r_chiral_restr 0.06 r_gen_planes_refined 0.018 r_gen_planes_other 0.015 r_bond_refined_d 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1512 Nucleic Acid Atoms Solvent Atoms 272 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling REFMAC phasing