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GlgE isoform 1 from Streptomyces coelicolor E423A mutant with maltose bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZSS PDB ENTRY 3ZSS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7.0
Crystal Properties Matthews coefficient Solvent content 3.26 62.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.18 α = 90 b = 114.18 β = 90 c = 313.64 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.29 37.78 99.9 0.09 15.4 10.7 93835 -3 51.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.29 2.35 99.9 0.58 3 10.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ZSS 2.29 37.78 89028 4697 99.86 0.19618 0.19491 0.1969 0.22003 0.2208 RANDOM 51.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.13 1.13 -2.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.022 r_dihedral_angle_4_deg 18.043 r_dihedral_angle_3_deg 13.516 r_dihedral_angle_1_deg 5.844 r_mcangle_it 1.727 r_angle_refined_deg 1.351 r_scbond_it 1.333 r_mcbond_it 1.079 r_mcbond_other 1.079 r_angle_other_deg 0.904
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.022 r_dihedral_angle_4_deg 18.043 r_dihedral_angle_3_deg 13.516 r_dihedral_angle_1_deg 5.844 r_mcangle_it 1.727 r_angle_refined_deg 1.351 r_scbond_it 1.333 r_mcbond_it 1.079 r_mcbond_other 1.079 r_angle_other_deg 0.904 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10136 Nucleic Acid Atoms Solvent Atoms 480 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing