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Structure of the N-terminal domain of Leishmania SAS-6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.1 100 MM BISTRIS PH 5.1, 200 MM MGCL2, 20% (W/V) PEG-3350
Crystal Properties Matthews coefficient Solvent content 3.5 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.25 α = 90 b = 84.25 β = 90 c = 239.94 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2012-04-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 48.86 99.9 0.14 7.6 5.9 48008 1.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.27 100 1.5 1.4 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.15 79.49 45569 2398 99.8 0.21024 0.20839 0.2151 0.24534 0.2501 RANDOM 51.513
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.52 1.52 -3.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.435 r_dihedral_angle_4_deg 21.685 r_dihedral_angle_3_deg 13.221 r_dihedral_angle_1_deg 6.025 r_scangle_it 5.716 r_mcangle_it 5.068 r_scbond_it 3.494 r_mcbond_it 3.122 r_mcbond_other 3.116 r_angle_refined_deg 1.349
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.435 r_dihedral_angle_4_deg 21.685 r_dihedral_angle_3_deg 13.221 r_dihedral_angle_1_deg 6.025 r_scangle_it 5.716 r_mcangle_it 5.068 r_scbond_it 3.494 r_mcbond_it 3.122 r_mcbond_other 3.116 r_angle_refined_deg 1.349 r_angle_other_deg 0.701 r_nbd_refined 0.219 r_symmetry_vdw_refined 0.209 r_nbtor_refined 0.18 r_nbd_other 0.172 r_symmetry_vdw_other 0.17 r_symmetry_hbond_refined 0.136 r_xyhbond_nbd_refined 0.134 r_xyhbond_nbd_other 0.103 r_nbtor_other 0.083 r_chiral_restr 0.069 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3356 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling HKL2Map phasing