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Structure of Rolling Circle Replication Initiator Protein from Geobacillus stearothermophilus.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.2 M PROLINE, 0.1 M HEPES PH 7.5, 10 % (V/V) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.69 54.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.111 α = 90 b = 136.848 β = 90 c = 149.157 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M MIRRORS 2012-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40.2 99.7 0.05 16.9 7 60795 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 99 0.86 2.2 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT NONE 2.3 40.25 57652 3077 99.63 0.19503 0.19296 0.1968 0.23457 0.2402 RANDOM 67.222
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 1.35 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.542 r_dihedral_angle_4_deg 18.351 r_dihedral_angle_3_deg 16.525 r_scangle_it 8.471 r_mcangle_it 6.787 r_dihedral_angle_1_deg 6.173 r_scbond_it 5.701 r_mcbond_it 4.764 r_mcbond_other 4.761 r_angle_refined_deg 1.543
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.542 r_dihedral_angle_4_deg 18.351 r_dihedral_angle_3_deg 16.525 r_scangle_it 8.471 r_mcangle_it 6.787 r_dihedral_angle_1_deg 6.173 r_scbond_it 5.701 r_mcbond_it 4.764 r_mcbond_other 4.761 r_angle_refined_deg 1.543 r_angle_other_deg 1.271 r_symmetry_vdw_other 0.234 r_symmetry_vdw_refined 0.23 r_symmetry_hbond_refined 0.137 r_chiral_restr 0.087 r_symmetry_hbond_other 0.041 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_gen_planes_other 0.009 r_bond_other_d 0.008 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8720 Nucleic Acid Atoms Solvent Atoms 219 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHARP phasing