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Leishmania major N-myristoyltransferase in complex with a biphenyl- derivative inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 30% PEG 1500, 0.2 M NACL, 0.1 M NA CACODYLATE, PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.23 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.46 α = 90 b = 92.093 β = 113.71 c = 53.636 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2012-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 31 100 0.06 10.6 3.8 47383 1.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 100 0.63 1.8 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.7 49.11 45023 2334 99.93 0.18776 0.1848 0.1843 0.24558 0.2451 RANDOM 25.192
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 -0.39 1.09 -0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.231 r_dihedral_angle_4_deg 17.342 r_dihedral_angle_3_deg 15.04 r_dihedral_angle_1_deg 6.675 r_mcangle_it 3.372 r_scbond_it 3.07 r_mcbond_it 2.464 r_angle_refined_deg 2.184 r_chiral_restr 0.15 r_bond_refined_d 0.022
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.231 r_dihedral_angle_4_deg 17.342 r_dihedral_angle_3_deg 15.04 r_dihedral_angle_1_deg 6.675 r_mcangle_it 3.372 r_scbond_it 3.07 r_mcbond_it 2.464 r_angle_refined_deg 2.184 r_chiral_restr 0.15 r_bond_refined_d 0.022 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3354 Nucleic Acid Atoms Solvent Atoms 518 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling