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Leishmania major N-myristoyltransferase in complex with an aminoacylpyrrolidine inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 30% PEG 1500, 0.2 M NACL, 0.1 M NA CACODYLATE, PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.23 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.464 α = 90 b = 92.163 β = 113.69 c = 53.666 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 46 96 0.06 10.8 4.2 68755 1.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.51 96 0.96 1.6 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.48 49.15 65278 3421 95.71 0.20207 0.20002 0.2003 0.24166 0.2422 RANDOM 22.774
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 -0.6 1.34 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.977 r_dihedral_angle_4_deg 19.112 r_dihedral_angle_3_deg 15.983 r_dihedral_angle_1_deg 6.867 r_mcangle_it 3.393 r_scbond_it 3.182 r_mcbond_it 2.421 r_angle_refined_deg 2.33 r_chiral_restr 0.163 r_bond_refined_d 0.024
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.977 r_dihedral_angle_4_deg 19.112 r_dihedral_angle_3_deg 15.983 r_dihedral_angle_1_deg 6.867 r_mcangle_it 3.393 r_scbond_it 3.182 r_mcbond_it 2.421 r_angle_refined_deg 2.33 r_chiral_restr 0.163 r_bond_refined_d 0.024 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3354 Nucleic Acid Atoms Solvent Atoms 398 Heterogen Atoms 91
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling