☰ Navigation Tabs
Crystal structure of complement factors H and FHL-1 binding protein BBH06 or CRASP-2 from Borrelia burgdorferi (Native)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BG0 PDB ENTRY 4BG0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.2M SODIUM ACETATE, 0.1M TRIS PH 8.5, 30% PEG 2000MME
Crystal Properties Matthews coefficient Solvent content 1.96 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.69 α = 90 b = 48.84 β = 90 c = 44.15 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD RH-COATED TOROIDAL SI MIRROR 2013-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 33.22 99.8 0.04 17.8 3.6 19733 3.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.87 100 0.2 6.1 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4BG0 1.83 26.55 16943 914 99.62 0.19714 0.19487 0.2036 0.23904 0.2486 RANDOM 23.763
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.631 r_dihedral_angle_4_deg 24.684 r_dihedral_angle_3_deg 13.958 r_long_range_B_refined 6.508 r_long_range_B_other 6.481 r_dihedral_angle_1_deg 5.688 r_scangle_other 5.086 r_scbond_it 3.281 r_scbond_other 3.279 r_mcangle_it 3.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.631 r_dihedral_angle_4_deg 24.684 r_dihedral_angle_3_deg 13.958 r_long_range_B_refined 6.508 r_long_range_B_other 6.481 r_dihedral_angle_1_deg 5.688 r_scangle_other 5.086 r_scbond_it 3.281 r_scbond_other 3.279 r_mcangle_it 3.002 r_mcangle_other 3.001 r_mcbond_other 2.19 r_mcbond_it 2.189 r_angle_refined_deg 1.841 r_angle_other_deg 0.944 r_chiral_restr 0.116 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1698 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing