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Plasmodium vivax N-myristoyltransferase in complex with a benzothiophene inhibitor (compound 20b)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 0.2 M AS, 25% PEG 3350, 0.1 M BIS-TRIS PH 6.0
Crystal Properties Matthews coefficient Solvent content 2.22 44.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.501 α = 90 b = 121.054 β = 90 c = 178.677 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2012-03-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 24 100 0.27 3.2 5.8 216384 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 1.48 99.9 0.59 1.4 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.46 100.22 204367 10801 99.41 0.2169 0.21492 0.2145 0.25426 0.2541 RANDOM 16.707
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 -0.03 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.192 r_dihedral_angle_4_deg 15.941 r_dihedral_angle_3_deg 15.365 r_dihedral_angle_1_deg 6.551 r_mcangle_it 2.12 r_angle_refined_deg 2.1 r_scbond_it 2.026 r_mcbond_it 1.454 r_chiral_restr 0.144 r_bond_refined_d 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.192 r_dihedral_angle_4_deg 15.941 r_dihedral_angle_3_deg 15.365 r_dihedral_angle_1_deg 6.551 r_mcangle_it 2.12 r_angle_refined_deg 2.1 r_scbond_it 2.026 r_mcbond_it 1.454 r_chiral_restr 0.144 r_bond_refined_d 0.02 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9384 Nucleic Acid Atoms Solvent Atoms 1291 Heterogen Atoms 306
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling