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Apo Transketolase from Lactobacillus salivarius at 2.2A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20 % W/V PEG3350, 0.2 M SODIUM CHLORIDE
Crystal Properties Matthews coefficient Solvent content 2.19 43.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.15 α = 90 b = 76.15 β = 90 c = 194.51 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M MIRRORS 2012-03-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 39.14 99.7 0.06 17.8 6.6 33992
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 99.9 0.62 2.8 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 39.14 32219 1720 99.57 0.16524 0.16236 0.1715 0.21917 0.2258 RANDOM 44.117
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -0.25 -0.25 0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.725 r_dihedral_angle_4_deg 20.15 r_dihedral_angle_3_deg 15.831 r_dihedral_angle_1_deg 6.509 r_mcangle_it 3.499 r_scbond_it 3.22 r_mcbond_it 2.539 r_mcbond_other 2.537 r_angle_refined_deg 1.78 r_angle_other_deg 0.873
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.725 r_dihedral_angle_4_deg 20.15 r_dihedral_angle_3_deg 15.831 r_dihedral_angle_1_deg 6.509 r_mcangle_it 3.499 r_scbond_it 3.22 r_mcbond_it 2.539 r_mcbond_other 2.537 r_angle_refined_deg 1.78 r_angle_other_deg 0.873 r_chiral_restr 0.101 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5092 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction SCALA data scaling MOLREP phasing