☰ Navigation Tabs
Complex of human Sirt3 with Bromo-Resveratrol and ACS2 peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4H8D PDB ENTRY 4H8D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 250 MM (NH4)2SO4, 100 MM BISTRIS PH 6, 21% (W/V) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.33 47.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.7 α = 90 b = 52.6 β = 90 c = 159.7 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD COLLIMATOR 2011-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 37.4 98.6 0.05 11.5 2.1 37699 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99 0.43 1.99 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4H8D 2 37.42 19507 1025 99.58 0.19614 0.19375 0.2002 0.24056 0.2507 RANDOM 40.552
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 1.64 -1.71
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 47.891 r_dihedral_angle_2_deg 35.802 r_dihedral_angle_4_deg 17.16 r_dihedral_angle_3_deg 16.063 r_long_range_B_refined 8.066 r_long_range_B_other 8.015 r_dihedral_angle_1_deg 6.768 r_angle_refined_deg 1.923 r_scangle_other 1.918 r_mcangle_it 1.729
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 47.891 r_dihedral_angle_2_deg 35.802 r_dihedral_angle_4_deg 17.16 r_dihedral_angle_3_deg 16.063 r_long_range_B_refined 8.066 r_long_range_B_other 8.015 r_dihedral_angle_1_deg 6.768 r_angle_refined_deg 1.923 r_scangle_other 1.918 r_mcangle_it 1.729 r_mcangle_other 1.729 r_scbond_it 1.221 r_scbond_other 1.22 r_mcbond_it 1.016 r_mcbond_other 1.014 r_angle_other_deg 0.952 r_chiral_restr 0.114 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2112 Nucleic Acid Atoms Solvent Atoms 125 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing