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Crystal Structure of Guanarito virus GP2 in the post-fusion conformation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MKO PDB ENTRY 3MKO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.5 0.15 M LI2SO4, 0.1 M CITRIC ACID PH 3.5, 18% W/V PEG 6000
Crystal Properties Matthews coefficient Solvent content 3.9 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.5 α = 90 b = 98.5 β = 90 c = 78.74 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2013-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4.14 50 100 0.09 26.6 5.1 5894 -3 171.92
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 4.14 4.14 100 1 1.9 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3MKO 4.14 38.44 5821 259 99.59 0.256 0.255 0.2814 0.2758 0.3072 RANDOM 222.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 14.0758 14.0758 -28.1516
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 25.71 t_omega_torsion 2.8 t_angle_deg 1.38 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 25.71 t_omega_torsion 2.8 t_angle_deg 1.38 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2649 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 358
Software Software Software Name Purpose BUSTER refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing