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FERREDOXIN NADP REDUCTASE MUTANT WITH GLU 103 REPLACED BY TYR, TYR 104 REPLACED BY PHE, SER 109 REPLACED BY PHE AND GLY 110 REPLACED BY PRO (E103Y-Y104F-S109F-G110P)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QUE PDB ENTRY 1QUE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 18-20% PEG 6000,20 MM AMMONIUM SULFATE, 0.1 M MES/NAOH, PH 5.0.
Crystal Properties Matthews coefficient Solvent content 2.95 58.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.41 α = 90 b = 87.41 β = 90 c = 96.448 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 43.71 99.8 0.08 16.1 9.3 45911 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 100 0.27 5.7 9.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QUE 1.7 43.71 42553 3303 99.78 0.17698 0.17484 0.1743 0.20496 0.2047 RANDOM 20.844
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.01 0.5 1.01 -1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.635 r_dihedral_angle_4_deg 14.125 r_dihedral_angle_3_deg 12.41 r_dihedral_angle_1_deg 5.26 r_angle_refined_deg 1.293 r_chiral_restr 0.23 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.635 r_dihedral_angle_4_deg 14.125 r_dihedral_angle_3_deg 12.41 r_dihedral_angle_1_deg 5.26 r_angle_refined_deg 1.293 r_chiral_restr 0.23 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2348 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing