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L-fuculose 1-phosphate aldolase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FUA PDB ENTRY 2FUA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 SPFCSA AT A CONCENTRATION OF 14 MG PER ML, BUFFERED IN 20 MM TRIS-HCL (PH 8.0) AND 5 MM DITHIOTHREITOL (DTT) WAS CRYSTALLIZED BY MIXING EQUAL VOLUMES WITH A SOLUTION OF 4% (V PER V) GLYCEROL, 1.50 M AMMONIUM SULPHATE, 100 MM TRIS-HCL (PH 8.5) AND 8 MM ZINC CHLORIDE.
Crystal Properties Matthews coefficient Solvent content 2.77 55.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.49 α = 90 b = 113.49 β = 90 c = 41.3 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M RH COATED 2012-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 40 97.7 0.12 6.5 4.5 15800
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.14 98.1 0.25 3.1 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2FUA 2.03 80.25 16234 924 99.5 0.22617 0.22312 0.222 0.27799 0.2767 RANDOM 38.475
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.9 0.9 -1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.297 r_dihedral_angle_3_deg 18.182 r_dihedral_angle_4_deg 14.007 r_long_range_B_refined 7.191 r_dihedral_angle_1_deg 6.06 r_mcangle_it 3.717 r_scbond_it 3.352 r_mcbond_it 2.534 r_angle_refined_deg 1.431 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.297 r_dihedral_angle_3_deg 18.182 r_dihedral_angle_4_deg 14.007 r_long_range_B_refined 7.191 r_dihedral_angle_1_deg 6.06 r_mcangle_it 3.717 r_scbond_it 3.352 r_mcbond_it 2.534 r_angle_refined_deg 1.431 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1635 Nucleic Acid Atoms Solvent Atoms 101 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement xia2 data reduction SCALA data scaling PHASER phasing