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Structure of the wild-type TCP10 domain of Danio rerio CPAP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 80 MM TRIS PH 8.5, 160 MM MGCL2, 20% PEG4K, 18 % GLYCEROL, 1MM DTT
Crystal Properties Matthews coefficient Solvent content 2.19 43.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.34 α = 90 b = 36.44 β = 117.31 c = 56.44 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2010-10-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.5 99.7 0.07 14.6 7.2 21047 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 100 0.93 2 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.7 28.68 19941 1075 99.56 0.20151 0.19919 0.2052 0.24373 0.2429 RANDOM 26.516
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.18 -0.14 1.09 -1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.746 r_dihedral_angle_4_deg 26.981 r_dihedral_angle_3_deg 13.445 r_dihedral_angle_1_deg 5.627 r_mcangle_it 3.341 r_mcbond_it 2.073 r_angle_refined_deg 1.478 r_angle_other_deg 0.77 r_mcbond_other 0.48 r_symmetry_vdw_refined 0.332
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.746 r_dihedral_angle_4_deg 26.981 r_dihedral_angle_3_deg 13.445 r_dihedral_angle_1_deg 5.627 r_mcangle_it 3.341 r_mcbond_it 2.073 r_angle_refined_deg 1.478 r_angle_other_deg 0.77 r_mcbond_other 0.48 r_symmetry_vdw_refined 0.332 r_nbd_refined 0.27 r_nbd_other 0.181 r_symmetry_vdw_other 0.181 r_nbtor_refined 0.17 r_symmetry_hbond_refined 0.134 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.082 r_nbtor_other 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1371 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling CRANK phasing