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Legionella pneumophila NTPDase1 crystal form II (closed) in complex with heptamolybdate and octamolybdate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 100MM NAMES PH 5.2, 11% PEG3350, 20MM MGCL2
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.564 α = 90 b = 85.436 β = 103.94 c = 71.779 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 45.3 96.5 0.06 18.4 6.1 119751 -3 12.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.49 45.34 118516 1207 96.33 0.12652 0.12608 0.1216 0.16858 0.1653 RANDOM 17.175
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 -0.59 0.96 -0.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.904 r_sphericity_free 27.655 r_dihedral_angle_4_deg 19.176 r_sphericity_bonded 16.816 r_dihedral_angle_3_deg 12.132 r_dihedral_angle_1_deg 5.954 r_rigid_bond_restr 4.682 r_angle_refined_deg 2.577 r_chiral_restr 0.12 r_bond_refined_d 0.021
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.904 r_sphericity_free 27.655 r_dihedral_angle_4_deg 19.176 r_sphericity_bonded 16.816 r_dihedral_angle_3_deg 12.132 r_dihedral_angle_1_deg 5.954 r_rigid_bond_restr 4.682 r_angle_refined_deg 2.577 r_chiral_restr 0.12 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5856 Nucleic Acid Atoms Solvent Atoms 451 Heterogen Atoms 282
Software Software Software Name Purpose REFMAC refinement