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Legionella pneumophila NTPDase1 crystal form VI (part-open) in complex with polytungstate POM-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 100MM TRIS PH 7.3, 200MM K NA TARTRATE, 18% PEG3350, 10MM POM1
Crystal Properties Matthews coefficient Solvent content 2.67 0.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.692 α = 90 b = 143.692 β = 90 c = 75.166 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.4 99.3 0.1 18.1 14.5 50327 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.7 124.44 49027 1293 98.74 0.15036 0.14907 0.1521 0.19757 0.1995 RANDOM 24.184
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 0.23 0.46 -1.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.156 r_sphericity_free 28.903 r_sphericity_bonded 18.479 r_dihedral_angle_4_deg 17.207 r_dihedral_angle_3_deg 12.4 r_dihedral_angle_1_deg 5.376 r_long_range_B_refined 5.293 r_scbond_it 4.301 r_mcangle_it 3.625 r_rigid_bond_restr 2.911
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.156 r_sphericity_free 28.903 r_sphericity_bonded 18.479 r_dihedral_angle_4_deg 17.207 r_dihedral_angle_3_deg 12.4 r_dihedral_angle_1_deg 5.376 r_long_range_B_refined 5.293 r_scbond_it 4.301 r_mcangle_it 3.625 r_rigid_bond_restr 2.911 r_mcbond_it 2.831 r_angle_refined_deg 1.42 r_chiral_restr 0.09 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2840 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement