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Crystal structure of the NADPH-T3 form of mouse Mu-crystallin.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2I99 PDB ENTRY 2I99
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 200 MM KH2PO4, 15% PEG 3350, 280 MM NASCN
Crystal Properties Matthews coefficient Solvent content 2.16 42.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.24 α = 90 b = 97.14 β = 104.9 c = 75.67 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 42.7 99.5 0.07 14.28 3.76 63604 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.85 98.7 0.4 3.69 3.74
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2I99 1.75 42.68 60423 3181 99.61 0.14857 0.14624 0.1566 0.19224 0.1984 RANDOM 18.677
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.54 0.01 -0.31 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.484 r_sphericity_free 21.882 r_dihedral_angle_4_deg 19.416 r_dihedral_angle_3_deg 13.771 r_sphericity_bonded 6.028 r_dihedral_angle_1_deg 5.764 r_rigid_bond_restr 1.673 r_mcangle_it 1.477 r_angle_refined_deg 1.28 r_mcbond_it 1.185
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.484 r_sphericity_free 21.882 r_dihedral_angle_4_deg 19.416 r_dihedral_angle_3_deg 13.771 r_sphericity_bonded 6.028 r_dihedral_angle_1_deg 5.764 r_rigid_bond_restr 1.673 r_mcangle_it 1.477 r_angle_refined_deg 1.28 r_mcbond_it 1.185 r_mcbond_other 1.178 r_angle_other_deg 0.734 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4561 Nucleic Acid Atoms Solvent Atoms 538 Heterogen Atoms 144
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing