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Crystal structure of the apo form of mouse Mu-crystallin.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2I99 PDB ENTRY 2I99
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 10 MM TRIS-CL PH 8.5, 180 MM KH2PO4, 14.4% PEG 3350, 240 MM NASCN
Crystal Properties Matthews coefficient Solvent content 2.47 49.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.28 α = 90 b = 96.55 β = 103.28 c = 76.08 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 48.3 98.9 0.06 13.4 2.9 28087 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 98.9 0.33 3.52 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2I99 2.3 48.28 26682 1404 99 0.19495 0.19241 0.1953 0.24327 0.2454 RANDOM 34.658
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.37 -0.6 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.625 r_dihedral_angle_4_deg 18.498 r_dihedral_angle_3_deg 17.771 r_dihedral_angle_1_deg 5.47 r_mcangle_it 1.604 r_angle_refined_deg 1.097 r_mcbond_it 0.922 r_mcbond_other 0.921 r_scbond_it 0.9 r_angle_other_deg 0.733
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.625 r_dihedral_angle_4_deg 18.498 r_dihedral_angle_3_deg 17.771 r_dihedral_angle_1_deg 5.47 r_mcangle_it 1.604 r_angle_refined_deg 1.097 r_mcbond_it 0.922 r_mcbond_other 0.921 r_scbond_it 0.9 r_angle_other_deg 0.733 r_chiral_restr 0.059 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4435 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing