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Complement regulator acquiring outer surface protein BbCRASP-4 or ErpC from Borrelia burgdorferi
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4J38 PDB ENTRY 4J38
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.1 HEPES PH 7.5, 10% ISOPROPANOL, 20% PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.65 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.16 α = 90 b = 71.16 β = 90 c = 75.42 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD RH-COATED TOROIDAL SI MIRROR 2013-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.15 41.85 86.3 0.12 6.3 2.2 5659 1.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.15 3.32 83.4 0.44 2.3 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4J38 3.15 35.61 5393 264 85.86 0.14174 0.1391 0.1467 0.1956 0.1882 RANDOM 43.137
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.91 0.91 -1.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.015 r_dihedral_angle_4_deg 29.449 r_sphericity_bonded 23.807 r_dihedral_angle_3_deg 17.516 r_mcangle_it 9.531 r_scbond_it 7.807 r_mcbond_it 7.267 r_mcbond_other 7.226 r_dihedral_angle_1_deg 7.073 r_rigid_bond_restr 4.636
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.015 r_dihedral_angle_4_deg 29.449 r_sphericity_bonded 23.807 r_dihedral_angle_3_deg 17.516 r_mcangle_it 9.531 r_scbond_it 7.807 r_mcbond_it 7.267 r_mcbond_other 7.226 r_dihedral_angle_1_deg 7.073 r_rigid_bond_restr 4.636 r_angle_refined_deg 1.412 r_angle_other_deg 0.726 r_chiral_restr 0.073 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2104 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing