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Crystal structure of 3-oxoacyl-(acyl-carrier-protein) reductase (FabG) from Pseudomonas aeruginosa in complex with 1-(4-methoxy-1- methylindazol-3-yl)-3-(2-methoxyphenyl)urea at 2.4A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BNW PDB ENTRY 4BNW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.24 M SODIUM MALONATE PH 7.0, 20% (W/V) PEG3350, 1MM 1-(4-METHOXY-1-METHYLINDAZOL-3-YL)-3-(2-METHOXYPHENYL)UREA, FINAL PROTEIN CONCENTRATION 6.7 MG/ML
Crystal Properties Matthews coefficient Solvent content 1.99 38.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.323 α = 90 b = 108.73 β = 90 c = 148.639 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2012-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 29.73 98.8 0.07 14.7 3.7 35336 -3 31.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.51 99.3 0.54 3.2 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4BNW 2.4 29.72 33534 1763 98.25 0.25712 0.25506 0.2532 0.29653 0.2928 RANDOM 43.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.69 -2.52 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.163 r_dihedral_angle_4_deg 18.74 r_dihedral_angle_3_deg 15.899 r_dihedral_angle_1_deg 5.401 r_mcangle_it 4.049 r_mcbond_it 2.584 r_mcbond_other 2.581 r_scbond_it 2.556 r_angle_refined_deg 1.361 r_angle_other_deg 1.256
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.163 r_dihedral_angle_4_deg 18.74 r_dihedral_angle_3_deg 15.899 r_dihedral_angle_1_deg 5.401 r_mcangle_it 4.049 r_mcbond_it 2.584 r_mcbond_other 2.581 r_scbond_it 2.556 r_angle_refined_deg 1.361 r_angle_other_deg 1.256 r_chiral_restr 0.067 r_bond_refined_d 0.011 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6938 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing