☰ Navigation Tabs
Crystal structure of 3-oxoacyl-(acyl-carrier-protein) reductase (FabG) from Pseudomonas aeruginosa in complex with 4-(2-phenylthieno(3,2-d) pyrimidin-4-yl)morpholine at 1.8A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BNW PDB ENTRY 4BNW, LIGAND FREE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.24 M SODIUM MALONATE PH 7.0, 20% (W/V) PEG3350, 1 MM 4-(2-PHENYLTHIENO(3, 2-D)PYRIMIDIN-4-YL)MORPHOLINE, FINAL PROTEIN CONCENTRATION 6.7 MG/ML
Crystal Properties Matthews coefficient Solvent content 1.96 37.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.94 α = 90 b = 108.39 β = 90 c = 148.17 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2012-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30.58 99.7 0.07 13 4.3 82576 -3 19.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 99.4 0.35 3.8 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4BNW, LIGAND FREE 1.8 30.6 78344 4151 99.57 0.17404 0.17263 0.1827 0.20088 0.2111 RANDOM 29.148
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.62 -1.66 -0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.134 r_dihedral_angle_4_deg 16.524 r_dihedral_angle_3_deg 14.514 r_dihedral_angle_1_deg 5.451 r_mcangle_it 3.927 r_scbond_it 3.902 r_mcbond_it 2.71 r_mcbond_other 2.71 r_angle_refined_deg 1.874 r_angle_other_deg 1.732
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.134 r_dihedral_angle_4_deg 16.524 r_dihedral_angle_3_deg 14.514 r_dihedral_angle_1_deg 5.451 r_mcangle_it 3.927 r_scbond_it 3.902 r_mcbond_it 2.71 r_mcbond_other 2.71 r_angle_refined_deg 1.874 r_angle_other_deg 1.732 r_chiral_restr 0.108 r_bond_refined_d 0.019 r_bond_other_d 0.011 r_gen_planes_refined 0.011 r_gen_planes_other 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7029 Nucleic Acid Atoms Solvent Atoms 420 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing