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Short chain alcohol dehydrogenase from Ralstonia sp. DSM 6428 in complex with NADPH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.1M BIS-TRIS PROPANE PH 8.0, CONTAINING 16% (W/V) PEG 3350, 0.2M KSCN AND 5% (W/V) ETHYLENE GLYCOL. PROTEIN AT 20 MG ML-1. CRYSTALS WERE SOAKED IN 10 MM NADPH FOR 5 MIN.
Crystal Properties Matthews coefficient Solvent content 3.3 35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 192.26 α = 90 b = 135.62 β = 100.12 c = 93.58 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC CCD 2013-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.89 74.54 99.2 0.18 7.4 4.2 52465 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.89 2.93 98.8 0.73 2 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.89 74.54 49788 2675 99.06 0.26942 0.26818 0.2719 0.29254 0.2952 RANDOM 34.207
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.94 2.97 -0.3 2.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.291 r_dihedral_angle_3_deg 17.353 r_dihedral_angle_4_deg 15.847 r_dihedral_angle_1_deg 6.367 r_mcangle_it 3.333 r_mcbond_it 1.991 r_mcbond_other 1.99 r_scbond_it 1.815 r_angle_refined_deg 1.597 r_angle_other_deg 0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.291 r_dihedral_angle_3_deg 17.353 r_dihedral_angle_4_deg 15.847 r_dihedral_angle_1_deg 6.367 r_mcangle_it 3.333 r_mcbond_it 1.991 r_mcbond_other 1.99 r_scbond_it 1.815 r_angle_refined_deg 1.597 r_angle_other_deg 0.99 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10987 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms 288
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing