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Structure of the UBZ1and2 tandem of the ubiquitin-binding adaptor protein TAX1BP1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.1 M TRIS PH 8.5, 1 M LISO4
Crystal Properties Matthews coefficient Solvent content 3.65 66.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.878 α = 90 b = 118.878 β = 90 c = 327.345 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 130 CCD ADSC QUANTUM 210 MIRRORS 2007-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.59 51.5 100 0.1 6.38 12.1 43605 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.59 2.73 100 0.79 0.96 10.44
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.75 103.14 34714 1823 99.94 0.21673 0.21471 0.2239 0.25459 0.259 RANDOM 23.732
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.79 -1.89 -3.79 5.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.152 r_dihedral_angle_4_deg 27.094 r_dihedral_angle_3_deg 19.353 r_dihedral_angle_1_deg 5.622 r_scangle_it 1.843 r_angle_refined_deg 1.346 r_scbond_it 1.163 r_mcangle_it 0.872 r_mcbond_it 0.447 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.152 r_dihedral_angle_4_deg 27.094 r_dihedral_angle_3_deg 19.353 r_dihedral_angle_1_deg 5.622 r_scangle_it 1.843 r_angle_refined_deg 1.346 r_scbond_it 1.163 r_mcangle_it 0.872 r_mcbond_it 0.447 r_chiral_restr 0.09 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5761 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling autoSHARP phasing