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P4 PROTEIN FROM BACTERIOPHAGE PHI12 IN COMPLEX WITH UTP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W44 PDB ENTRY 1W44
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.8 10% PEG 1500 IN 100 MM SODIUM ACETATE PH 4.8, AND 5MM AMCPP
Crystal Properties Matthews coefficient Solvent content 2.6 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.387 α = 90 b = 129.33 β = 90 c = 159.073 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 100 0.07 29.4 7.2 85262 4.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99.8 0.38 4.9 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W44 1.9 19.96 80998 4264 99.63 0.19367 0.19312 0.20383 0.2098 RANDOM 26.097
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 0.55 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.371 r_dihedral_angle_3_deg 14.753 r_dihedral_angle_4_deg 11.648 r_dihedral_angle_1_deg 5.43 r_mcangle_it 1.334 r_angle_refined_deg 1.007 r_angle_other_deg 0.755 r_mcbond_it 0.73 r_mcbond_other 0.729 r_scbond_it 0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.371 r_dihedral_angle_3_deg 14.753 r_dihedral_angle_4_deg 11.648 r_dihedral_angle_1_deg 5.43 r_mcangle_it 1.334 r_angle_refined_deg 1.007 r_angle_other_deg 0.755 r_mcbond_it 0.73 r_mcbond_other 0.729 r_scbond_it 0.64 r_chiral_restr 0.054 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6773 Nucleic Acid Atoms Solvent Atoms 640 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CNS phasing