☰ Navigation Tabs
Crystal Structure of a variant of the Major Birch Pollen Allergen Bet v 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4A88 PDB ENTRY 4A88
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 2M AMMONIUM SULFATE, 1.5 % MPD, pH 4.5
Crystal Properties Matthews coefficient Solvent content 1.99 38.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.732 α = 90 b = 55.811 β = 93.25 c = 38.099 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.14 55.81 96.3 0.04 17.1 3.2 47976
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.14 1.2 80.7 0.27 3.5 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4A88 1.14 38.04 45515 2439 96.15 0.13656 0.13446 0.1444 0.17545 0.1862 RANDOM 11.367
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 0.1 0.31 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.594 r_dihedral_angle_4_deg 33.604 r_sphericity_free 23.978 r_dihedral_angle_3_deg 11.44 r_mcangle_it 10.474 r_sphericity_bonded 8.905 r_mcbond_it 7.93 r_scbond_it 6.699 r_dihedral_angle_1_deg 5.92 r_mcbond_other 3.793
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.594 r_dihedral_angle_4_deg 33.604 r_sphericity_free 23.978 r_dihedral_angle_3_deg 11.44 r_mcangle_it 10.474 r_sphericity_bonded 8.905 r_mcbond_it 7.93 r_scbond_it 6.699 r_dihedral_angle_1_deg 5.92 r_mcbond_other 3.793 r_rigid_bond_restr 2.731 r_angle_refined_deg 1.547 r_angle_other_deg 0.863 r_symmetry_vdw_refined 0.349 r_nbd_refined 0.308 r_symmetry_hbond_refined 0.266 r_symmetry_vdw_other 0.248 r_xyhbond_nbd_refined 0.219 r_xyhbond_nbd_other 0.213 r_nbd_other 0.197 r_nbtor_refined 0.182 r_chiral_restr 0.091 r_nbtor_other 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1222 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing